PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611378.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 450aa    MW: 49267.9 Da    PI: 8.6761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-114873227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_009611378.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                    6899********************97 PP
2zf-CCCH32.21.8e-10115135727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     +++++tGtCk+G++CkF+H++
  XP_009611378.1 115 QYYLKTGTCKFGATCKFHHPK 135
                     59*****************96 PP
3zf-CCCH39.31e-12157181327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_009611378.1 157 EAECAYYMRTGQCKFGSTCKFHHPQ 181
                     689********************97 PP
4zf-CCCH36.58e-12312336327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009611378.1 312 QPECQFYMKTGDCKFGAVCRFHHPR 336
                     799********************96 PP
5zf-CCCH40.16e-13356382127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_009611378.1 356 PGEPLCIFYSRYGICKFGPSCKFDHPM 382
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-45272IPR000571Zinc finger, CCCH-type
SMARTSM003560.069113135IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.662115136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4116134IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225154182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6156182IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10157181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4160180IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244309337IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.49E-5312339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5315339IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037355383IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10357382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5358382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQTT KFMYVQRSSM SINDQYYLKT  120
GTCKFGATCK FHHPKDKAGI AGRVTLNVLG YPLRPNEAEC AYYMRTGQCK FGSTCKFHHP  180
QPSNMMVSLR GSPVYPPVPS ATTPGQLSYP LSRGSFIPGA RWQAPSSYTP LIMPQGVVSV  240
PGFAYSGQMG SISSPEGQQQ TAGNSQVYGT SRSGDAANMG SQGVTSPYRP ASVPMGYYAL  300
QGENVFPERH GQPECQFYMK TGDCKFGAVC RFHHPRERLI PPPDCMLSPI GLPLRPGEPL  360
CIFYSRYGIC KFGPSCKFDH PMTVFTYSIS ASSSTDAPAV QRLLGSSSGT SALTLTSEGL  420
VEAVSTKPRR LSLSETRKMP PGDNNIDREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611378.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_016481310.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AXF60.0A0A1S4AXF6_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X2
STRINGXP_009611374.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-178zinc finger protein 1