PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009611374.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 454aa    MW: 49803.5 Da    PI: 8.673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009611374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-114873227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+++ rtG C++G++C+F+H+p
  XP_009611374.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73
                    6899********************97 PP
2zf-CCCH32.21.9e-10119139727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     +++++tGtCk+G++CkF+H++
  XP_009611374.1 119 QYYLKTGTCKFGATCKFHHPK 139
                     59*****************96 PP
3zf-CCCH39.31.1e-12161185327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_009611374.1 161 EAECAYYMRTGQCKFGSTCKFHHPQ 185
                     689********************97 PP
4zf-CCCH36.58.1e-12316340327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tG Ck+G+ C+F+H++
  XP_009611374.1 316 QPECQFYMKTGDCKFGAVCRFHHPR 340
                     799********************96 PP
5zf-CCCH40.16.1e-13360386127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_009611374.1 360 PGEPLCIFYSRYGICKFGPSCKFDHPM 386
                     589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4834674IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-54673IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-45272IPR000571Zinc finger, CCCH-type
SMARTSM003560.069117139IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-8119139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.662119140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4120138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225158186IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6158185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6160186IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4164184IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244313341IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8316340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.49E-5316343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5319343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037359387IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7359386IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10361386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLYLM QAIATARMKG EYPERMGQPE CQTTKFMYVQ RSSMSINDQY  120
YLKTGTCKFG ATCKFHHPKD KAGIAGRVTL NVLGYPLRPN EAECAYYMRT GQCKFGSTCK  180
FHHPQPSNMM VSLRGSPVYP PVPSATTPGQ LSYPLSRGSF IPGARWQAPS SYTPLIMPQG  240
VVSVPGFAYS GQMGSISSPE GQQQTAGNSQ VYGTSRSGDA ANMGSQGVTS PYRPASVPMG  300
YYALQGENVF PERHGQPECQ FYMKTGDCKF GAVCRFHHPR ERLIPPPDCM LSPIGLPLRP  360
GEPLCIFYSR YGICKFGPSC KFDHPMTVFT YSISASSSTD APAVQRLLGS SSGTSALTLT  420
SEGLVEAVST KPRRLSLSET RKMPPGDNNI DREG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141600.0BT014160.1 Lycopersicon esculentum clone 133280F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611374.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009611375.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_009611377.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016481307.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016481308.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_016481309.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S4AXS90.0A0A1S4AXS9_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_009611374.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-175zinc finger protein 1