PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009611349.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 362aa MW: 39870.8 Da PI: 6.8488

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	172	219	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h + Er+RR+r+ ++f L +l+P++ kKl+Ka++L A+++Ik+L+ XP_009611349.1 172 QDHVMEERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKHIKQLE 219 569999********************.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.466	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-10	172	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.2E-16	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-16	174	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.17E-13	174	223	No hit	No description
SMART	SM00353	2.0E-14	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDFSSAKWWA EMETMSTDDH AFINHCQMMT QLDELPFSKP FSSSCTSYDI QPSHAAAGIL 60 DVKSSFCGYA TETHQMTSFS PPPLNSSSVF SSCKFNLPSA NTTVATNHLE NLNYTSVKTE 120 LTSGTTLNFS SSVSTDSDDF GDSQNLIRAL GFGSADTTTQ KKSYNRTSLQ AQDHVMEERK 180 RRERLTQRFI ALSTLIPNLK KLDKASVLGD AIKHIKQLEE QVKTLEEKAK KCNEEPVVAV 240 KRPRLASSTS DHSSSEDNVS SVSTDRSQPD IKVRASNGNI LISISCKKQT GIIKEIYSQI 300 EKLNLSIISS SVIPFAYSTT HITIIAQMGH ELGMTAKNDA NRIRAAIMKL IGGQEEEAPF 360 TS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDFSSAKWWA EMETMSTDDH AFINHCQMMT QLDELPFSKP FSSSCTSYDI QPSHAAAGIL  60
DVKSSFCGYA TETHQMTSFS PPPLNSSSVF SSCKFNLPSA NTTVATNHLE NLNYTSVKTE  120
LTSGTTLNFS SSVSTDSDDF GDSQNLIRAL GFGSADTTTQ KKSYNRTSLQ AQDHVMEERK  180
RRERLTQRFI ALSTLIPNLK KLDKASVLGD AIKHIKQLEE QVKTLEEKAK KCNEEPVVAV  240
KRPRLASSTS DHSSSEDNVS SVSTDRSQPD IKVRASNGNI LISISCKKQT GIIKEIYSQI  300
EKLNLSIISS SVIPFAYSTT HITIIAQMGH ELGMTAKNDA NRIRAAIMKL IGGQEEEAPF  360
TS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611349.1	0.0	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1S3X3A4	0.0	A0A1S3X3A4_TOBAC; transcription factor bHLH18-like
STRING	XP_009611349.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4508	14	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-42	bHLH family protein