PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009610968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 541aa MW: 60163.8 Da PI: 6.1363 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.1 | 5.3e-14 | 167 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+ ++ a++k++g XP_009610968.1 167 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARSYDLAALKYWG 226 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 50.8 | 4e-16 | 271 | 320 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g XP_009610968.1 271 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDVAAIKFRG 320 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.62E-22 | 167 | 236 | No hit | No description |
Pfam | PF00847 | 4.7E-11 | 167 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-16 | 167 | 236 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-15 | 168 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-29 | 168 | 240 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 168 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 169 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.47E-24 | 269 | 328 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 269 | 329 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 270 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-31 | 270 | 334 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 270 | 328 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-11 | 271 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 310 | 330 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 541 aa Download sequence Send to blast |
MGSMNSNNWL SFHLSPHLQT TESRSLGLVT ETIDNPFQNQ EWNFSETQGG NEVPKVADFL 60 GVSKSGHESE LVSYSEIQAN DNSDYLFPNT NLMPMLNVTY DLQENACNMQ SLTLSMGSGK 120 NSTSETCASP SANATAGASS TSGENSNTSI VEAAPRRTSD TFGQRTSIYR GVTRHRWTGR 180 YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARSYDLA ALKYWGTSTT TNFPINNYEK 240 EVEEMKHMTR QESIASIRRK STGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FGTEEEAAEA YDVAAIKFRG LCAVTNFEMN RYDVKAILES NTLPVGGGAA KRLKETQAFE 360 SSRKRDQEMI SLNSSTTFHQ YENSNNSGVA FQTYPLMQQP LLTTLQNQDF SSQFHQGYIQ 420 THLQLHHQQS HQMYNDYLQS NNPVFLHGLM NNMGSSSSVI DNNGGSSSGS YSTGGYHNNT 480 TGIGMTSNSP SGGVSAHEEI AMVKVDYDMP YTGWSGESSV QESNPGGFNM WNDREIEDID 540 L |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610968.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A1S4AVA5 | 0.0 | A0A1S4AVA5_TOBAC; AP2-like ethylene-responsive transcription factor PLT2 isoform X2 | ||||
STRING | XP_009610966.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |