PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009610670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 327aa MW: 37645.6 Da PI: 5.6196 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.9 | 3.6e-08 | 277 | 310 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +qV +WF N+R + XP_009610670.1 277 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 310 569*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.3E-15 | 63 | 107 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.0E-15 | 65 | 106 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.4E-23 | 117 | 172 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.0E-18 | 121 | 171 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.097 | 231 | 251 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0077 | 231 | 252 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 251 | 314 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-16 | 253 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-10 | 253 | 318 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.47E-10 | 254 | 314 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 258 | 315 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-18 | 271 | 310 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAFQDHFSQE LALQQHQQQN ADDVSDQSMS FSIKLSQQYR GERVDEFSNN NNNNNNNDSW 60 ESEKYKADIL NHHLCDQLLS AHVACLRIAT PVDQLPRIDE QLTESQNSVA KYYVVGQSQR 120 PIDDKDLDQF MTHYVLLLSS FKEQLQQHVR VHAMEAVMAC WELDQSLQNL TGVGPGEGTG 180 ATMSDDDDDQ TDSETNTNCY NGVLDGSDST GFGPLVPTES ERFLMERVRQ ELKQEFKQGY 240 KEKIVDIREE ILRKRRAGKL PGDTTSALKA WWKSHSKWPY PTEEDKAKLV QETGLQLKQV 300 NNWFINQRKR NWHTTSSSSA QKSKRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 307 | 326 | RKRNWHTTSSSSAQKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610670.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like LET12 isoform X2 | ||||
Swissprot | O22300 | 1e-155 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A1J6IIA2 | 0.0 | A0A1J6IIA2_NICAT; Homeobox protein knotted-1-like let12 | ||||
STRING | XP_009610663.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-143 | KNOTTED1-like homeobox gene 3 |