PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610663.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 338aa    MW: 38806.8 Da    PI: 5.6069
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.7e-082773102154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +qV +WF N+R +
  XP_009610663.1 277 KWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKR 310
                     569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.3E-1563107IPR005540KNOX1
PfamPF037901.0E-1565106IPR005540KNOX1
SMARTSM012563.4E-23117172IPR005541KNOX2
PfamPF037917.3E-18121171IPR005541KNOX2
PROSITE profilePS512139.097231251IPR005539ELK domain
SMARTSM011880.0077231252IPR005539ELK domain
PROSITE profilePS5007111.726251314IPR001356Homeobox domain
SuperFamilySSF466891.15E-15253316IPR009057Homeodomain-like
SMARTSM003891.1E-10253318IPR001356Homeobox domain
CDDcd000862.03E-10254314No hitNo description
Gene3DG3DSA:1.10.10.604.3E-25258315IPR009057Homeodomain-like
PfamPF059207.0E-18271310IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAFQDHFSQE LALQQHQQQN ADDVSDQSMS FSIKLSQQYR GERVDEFSNN NNNNNNNDSW  60
ESEKYKADIL NHHLCDQLLS AHVACLRIAT PVDQLPRIDE QLTESQNSVA KYYVVGQSQR  120
PIDDKDLDQF MTHYVLLLSS FKEQLQQHVR VHAMEAVMAC WELDQSLQNL TGVGPGEGTG  180
ATMSDDDDDQ TDSETNTNCY NGVLDGSDST GFGPLVPTES ERFLMERVRQ ELKQEFKQGY  240
KEKIVDIREE ILRKRRAGKL PGDTTSALKA WWKSHSKWPY PTEEDKAKLV QETGLQLKQV  300
NNWFINQRKR NWHTTSSSSA QKSKRKSAGE KSRTDHFT
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610663.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
SwissprotO223001e-155LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1J6IIA20.0A0A1J6IIA2_NICAT; Homeobox protein knotted-1-like let12
STRINGXP_009610663.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-143KNOTTED1-like homeobox gene 3