PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610396.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 691aa    MW: 74966.4 Da    PI: 6.506
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08276296526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_009610396.1 276 PCPDFRK-GACQRGDACEYAHG 296
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1652165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.5E-1755173IPR020683Ankyrin repeat-containing domain
PfamPF127965.4E-966144IPR020683Ankyrin repeat-containing domain
SMARTSM002480.005975105IPR002110Ankyrin repeat
PROSITE profilePS5029716.54775158IPR020683Ankyrin repeat-containing domain
CDDcd002041.07E-1477172No hitNo description
SMARTSM002480.0017110142IPR002110Ankyrin repeat
PROSITE profilePS5008812.342110145IPR002110Ankyrin repeat
SMARTSM003562.1E-5271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4275298IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6276296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544276298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035663306329IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005306330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MCSGSKSKVC SADLAMEAEI QKQKDLLPGF SLLLELSASD DIINFQKAVE EEGHDMNEVG  60
LWYGRRIGVK KMGYEERTPL MIAATFGSKR VLNYMLEKGC LDVNQACGSD GATSLHCAIA  120
GGSSALLEVV KLLLDASADV NLVDANGKQA VDLISAQGCC LNSRRKILEH LLGGSSDDGE  180
ASGLIDQIIS EQAEEQLLLT PNISKFGSEK KEYPVDPSLP DIKIGIYGTD DFRMYIFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACQRGDA CEYAHGIFEC  300
WLHPAQYRTR MCKDETNCNR RVCFFAHKPE ELRPLYPSTG SAMLSPRSYS NDALSLDIAS  360
ISPRALGSPS FMMPPTSTPP MSPSTVASSV GGSLWPCQSS LATPTLQLPI SRLKTAYSAR  420
DVELDNGLLG FESHHLRQDQ LMDDLSALSS PSGWNSSSAK AAAFAASSSD RNGELSRHGG  480
LKPTNLDDIL ATLDSKILSQ LQGLSLDAGS PQLQSPKGMQ MRQNMNQQLM TGYSSGQSSP  540
SFRTSSSFGI DPSGAAAAAL SSRSAAFAKR SQSFIDRGAP GRLSGISSSL SNTSAVPPNL  600
SGWGSPDGKL DWGIQKEELN KLRKSASFGL RSSGSRFPMS EPSILNSSAE PMSSRQLSRE  660
DQQYHLNASR GSETIPTWAD QLYMEQEQIV H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610396.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1S4C6030.0A0A1S4C603_TOBAC; zinc finger CCCH domain-containing protein 66-like
STRINGXP_009610396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-154C3H family protein