PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 589aa    MW: 65404.7 Da    PI: 7.1301
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-093844162254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_009610004.1 384 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 416
                     89*****************************88 PP

2BELL99.42.9e-32246315372
            BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +el++ k+kL+s+l+eV++rYkqy++qlq+v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+
  XP_009610004.1 246 HELRRNKSKLISMLNEVYRRYKQYYQQLQAVVASFESVPGLGNAAPFAKLSLKALSKHFRCLKNAITDQL 315
                     899****************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-47182313IPR006563POX domain
PfamPF075267.2E-36187312IPR006563POX domain
PROSITE profilePS5007111.839357420IPR001356Homeobox domain
SMARTSM003891.0E-9360424IPR001356Homeobox domain
CDDcd000867.29E-12360421No hitNo description
SuperFamilySSF466898.13E-17362427IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-27363424IPR009057Homeodomain-like
PfamPF059201.4E-18377416IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MAEGFEAYHV PQQSRRDRLR VFVQNHPSDS AAGLLPFVDH HSLIPSDFLL VSDAKEKGVN  60
FMDPQLSSGV SFQEINGNPF LYSHQNFRFL DQSFNGGDVD VVYKQEPLSS LAAVPATNIS  120
NNNITTGQGL SLSLSSSHHY NNQSSSSSNL PLELNLQRYD SSIFTNDMLS KSNATVPLGP  180
FTGYASILKG SRFLKPAQRL LEEICDVGRG IYAEKLAAND NYAVMDPSLE APLSDDPQYS  240
CGDGSHELRR NKSKLISMLN EVYRRYKQYY QQLQAVVASF ESVPGLGNAA PFAKLSLKAL  300
SKHFRCLKNA ITDQLQYTGK SPNCESDNSI PRAGNPAGKD IYFQRQAIHN AGFVDHQPVW  360
RPQRGLPERA VIVLRAWLFD HFLHPYPTDS DKVMLAKQTG LSRNQVSNWF INARVRLWKP  420
MVEEIHNLET RQAQKAASQR EGQNKNNPIE HFPTSNSLPS EHPSTSSQQF HDVPSKRTRN  480
NDPSETHLGG DDQETMNLSY DNFSPHSHVG IDQMSASAGN GGVSLTLGLH QNNNVSIGLS  540
GSFPRNAARR FGIDANNEGF MFGGFETQNR QLGRDNNIIG GQLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15366424563Homeobox protein Meis2
3k2a_B6e-15366424563Homeobox protein Meis2
4xrs_A5e-15366423158Homeobox protein Meis1
4xrs_B5e-15366423158Homeobox protein Meis1
5bng_A5e-15366424159Homeobox protein Meis2
5bng_B5e-15366424159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610004.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_018628807.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A1S4ANF40.0A0A1S4ANF4_TOBAC; BEL1-like homeodomain protein 9
STRINGXP_009610001.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-102TALE family protein