PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009610003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 594aa MW: 65941.2 Da PI: 7.0423 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.8e-09 | 389 | 421 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + XP_009610003.1 389 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 421 89*****************************88 PP | |||||||
2 | BELL | 89.1 | 4.5e-29 | 246 | 320 | 3 | 72 |
BELL 3 qelqkkkakLlsllee.....VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +el++ k+kL+s+l+e V++rYkqy++qlq+v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+ XP_009610003.1 246 HELRRNKSKLISMLNEgdvhqVYRRYKQYYQQLQAVVASFESVPGLGNAAPFAKLSLKALSKHFRCLKNAITDQL 320 799**********96444444***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-43 | 182 | 318 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-33 | 187 | 317 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.839 | 362 | 425 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 365 | 429 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.52E-12 | 365 | 426 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-17 | 367 | 432 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-27 | 368 | 429 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-18 | 382 | 421 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MAEGFEAYHV PQQSRRDRLR VFVQNHPSDS AAGLLPFVDH HSLIPSDFLL VSDAKEKGVN 60 FMDPQLSSGV SFQEINGNPF LYSHQNFRFL DQSFNGGDVD VVYKQEPLSS LAAVPATNIS 120 NNNITTGQGL SLSLSSSHHY NNQSSSSSNL PLELNLQRYD SSIFTNDMLS KSNATVPLGP 180 FTGYASILKG SRFLKPAQRL LEEICDVGRG IYAEKLAAND NYAVMDPSLE APLSDDPQYS 240 CGDGSHELRR NKSKLISMLN EGDVHQVYRR YKQYYQQLQA VVASFESVPG LGNAAPFAKL 300 SLKALSKHFR CLKNAITDQL QYTGKSPNCE SDNSIPRAGN PAGKDIYFQR QAIHNAGFVD 360 HQPVWRPQRG LPERAVIVLR AWLFDHFLHP YPTDSDKVML AKQTGLSRNQ VSNWFINARV 420 RLWKPMVEEI HNLETRQAQK AASQREGQNK NNPIEHFPTS NSLPSEHPST SSQQFHDVPS 480 KRTRNNDPSE THLGGDDQET MNLSYDNFSP HSHVGIDQMS ASAGNGGVSL TLGLHQNNNV 540 SIGLSGSFPR NAARRFGIDA NNEGFMFGGF ETQNRQLGRD NNIIGGQLLH DFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 7e-15 | 371 | 429 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 7e-15 | 371 | 429 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 5e-15 | 371 | 428 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-15 | 371 | 428 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 5e-15 | 371 | 429 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 5e-15 | 371 | 429 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610004.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Refseq | XP_018628807.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1S4ANF4 | 0.0 | A0A1S4ANF4_TOBAC; BEL1-like homeodomain protein 9 | ||||
STRING | XP_009610001.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-98 | TALE family protein |