PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610001.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 594aa    MW: 65941.2 Da    PI: 7.0423
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-093894212254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_009610001.1 389 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 421
                     89*****************************88 PP
2BELL89.14.5e-29246320372
            BELL   3 qelqkkkakLlsllee.....VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +el++ k+kL+s+l+e     V++rYkqy++qlq+v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+
  XP_009610001.1 246 HELRRNKSKLISMLNEgdvhqVYRRYKQYYQQLQAVVASFESVPGLGNAAPFAKLSLKALSKHFRCLKNAITDQL 320
                     799**********96444444***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-43182318IPR006563POX domain
PfamPF075261.6E-33187317IPR006563POX domain
PROSITE profilePS5007111.839362425IPR001356Homeobox domain
SMARTSM003891.0E-9365429IPR001356Homeobox domain
CDDcd000866.52E-12365426No hitNo description
SuperFamilySSF466898.13E-17367432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-27368429IPR009057Homeodomain-like
PfamPF059201.4E-18382421IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MAEGFEAYHV PQQSRRDRLR VFVQNHPSDS AAGLLPFVDH HSLIPSDFLL VSDAKEKGVN  60
FMDPQLSSGV SFQEINGNPF LYSHQNFRFL DQSFNGGDVD VVYKQEPLSS LAAVPATNIS  120
NNNITTGQGL SLSLSSSHHY NNQSSSSSNL PLELNLQRYD SSIFTNDMLS KSNATVPLGP  180
FTGYASILKG SRFLKPAQRL LEEICDVGRG IYAEKLAAND NYAVMDPSLE APLSDDPQYS  240
CGDGSHELRR NKSKLISMLN EGDVHQVYRR YKQYYQQLQA VVASFESVPG LGNAAPFAKL  300
SLKALSKHFR CLKNAITDQL QYTGKSPNCE SDNSIPRAGN PAGKDIYFQR QAIHNAGFVD  360
HQPVWRPQRG LPERAVIVLR AWLFDHFLHP YPTDSDKVML AKQTGLSRNQ VSNWFINARV  420
RLWKPMVEEI HNLETRQAQK AASQREGQNK NNPIEHFPTS NSLPSEHPST SSQQFHDVPS  480
KRTRNNDPSE THLGGDDQET MNLSYDNFSP HSHVGIDQMS ASAGNGGVSL TLGLHQNNNV  540
SIGLSGSFPR NAARRFGIDA NNEGFMFGGF ETQNRQLGRD NNIIGGQLLH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-15371429563Homeobox protein Meis2
3k2a_B7e-15371429563Homeobox protein Meis2
4xrs_A5e-15371428158Homeobox protein Meis1
4xrs_B5e-15371428158Homeobox protein Meis1
5bng_A5e-15371429159Homeobox protein Meis2
5bng_B5e-15371429159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610004.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_018628807.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A1S4ANF40.0A0A1S4ANF4_TOBAC; BEL1-like homeodomain protein 9
STRINGXP_009610001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-98TALE family protein