PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009609536.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 24031.5 Da PI: 6.3674 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 91 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +g+++AeIrdp +g +r +lg++ t+e+Aa a+++a+ k++g XP_009609536.1 91 RYIGVRRRP-WGKFAAEIRDPERRG--ARLWLGTYQTPEDAALAYDQAAFKIRG 141 699******.**********84444..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 91 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-34 | 91 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.32E-29 | 91 | 151 | No hit | No description |
PROSITE profile | PS51032 | 23.275 | 91 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 91 | 150 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 91 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-12 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-12 | 131 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MNPADNATFS FSDVDFLDSI EHHLLNDSDF SNSFSPMSSS NVATPNSPSS SFGSCLLDEN 60 IEETTILESQ SEPEEGGKAA REENTKQYWR RYIGVRRRPW GKFAAEIRDP ERRGARLWLG 120 TYQTPEDAAL AYDQAAFKIR GSRARLNFPH LIGSNNMPEP TRVTGIRHNS RSLEPSSTSS 180 TTSSENGTRK RNIEVINSIA KAKLVGHIRD LEILI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-27 | 90 | 149 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB828150 | 0.0 | AB828150.1 Nicotiana tabacum ERF179 mRNA for ethylene response factor 179, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312506.1 | 1e-137 | ethylene-responsive transcription factor 14-like | ||||
TrEMBL | S0BBU2 | 1e-136 | S0BBU2_TOBAC; Ethylene response factor 179 | ||||
STRING | XP_009609536.1 | 1e-157 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-37 | ethylene-responsive element binding factor 13 |