PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009609461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 31418.2 Da PI: 5.8621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 128 | 179 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g+ XP_009609461.1 128 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTALEAAKAYDRAAFKLRGN 179 8********.**********9...6566**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.70E-32 | 127 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 127 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 128 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-15 | 128 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-23 | 128 | 188 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.184 | 128 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MASPQENCTT LDLIRQHLFD DAAFMEYYCS EPTTLDSQNS SSSESLDQSF SFEPTLNYAD 60 TAQSSSFEIS SFFDNSKTEF DCSELETIQK QSLNSRKQTS FKERKPSLNI AIPVKQQKVE 120 VVPRGKKHYR GVRQRPWGKF AAEIRDPNRK GTRVWLGTFD TALEAAKAYD RAAFKLRGNK 180 AIVNFPLEVA NFKQEYNNEI PQSANSGRKR VRETENEEQL VINKEMKIEE ERVPTTPLTP 240 SSWSAIWDSG DGKGIFEMPL LSPLSPHLPY SQLVII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-30 | 127 | 189 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016266 | 0.0 | AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018628697.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q9LW48 | 1e-148 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A1S3YC20 | 0.0 | A0A1S3YC20_TOBAC; ethylene-responsive transcription factor 5-like | ||||
STRING | XP_009609461.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-53 | ERF family protein |