PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 277aa    MW: 31260.9 Da    PI: 5.51
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20127177255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  XP_009609460.1 127 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 177
                     8********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32126186IPR001471AP2/ERF domain
CDDcd000182.10E-32126185No hitNo description
PROSITE profilePS5103224.131127185IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-23127187IPR016177DNA-binding domain
SMARTSM003801.6E-37127191IPR001471AP2/ERF domain
PfamPF008476.1E-15127177IPR001471AP2/ERF domain
PRINTSPR003671.2E-10128139IPR001471AP2/ERF domain
PRINTSPR003671.2E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASPQENCTL DLIRQHLFDD DAFMECYCSE PTTLDSQNSS SSESLDQSFS FEPTLNYADT  60
AQSSSFEISS FFDNSKTEFD CSELETIQKQ SLNSRKQTSF KERKPSLNIA IPVKLQKVEV  120
VPSEKKHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT AIEAAKAYDR AAFKLRGSKA  180
IVNFPLEVAN FKQEYNNEIP QSANSGRKRV RGTENEEQLV INKEMKREEE RVPTAAAPLT  240
PSSWSAIWDS GDGKGIFEVP PLSPLSPHIG YSQVVMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-31126188163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205211GRKRVRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0162660.0AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609460.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW481e-145ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLA0A1S4B4P10.0A0A1S4B4P1_TOBAC; ethylene-responsive transcription factor 5-like
STRINGXP_009609460.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.18e-64ERF family protein