PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609388.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 274aa    MW: 30320.4 Da    PI: 4.7215
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16133169135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_009609388.1 133 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 169
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062037.5E-1564105IPR010402CCT domain
PROSITE profilePS5101712.70964106IPR010402CCT domain
SMARTSM004014.9E-10127181IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12131181No hitNo description
Gene3DG3DSA:3.30.50.102.2E-15131173IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.46E-16132176No hitNo description
PROSITE patternPS003440133160IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13133168IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQS VDNDAPIRPN  60
ISRRIASLIR FREKRKERCF EKKVRYTCRK EVAQRMHRKN GQFASLKDGE KTYAGNIDSG  120
DSIPHHEPTL RRCQHCGISE SETPAMRRGP SGPRTLCNAC GLMWANKGML RDITKGGRHV  180
PFDKSEPRTP DIKLPTVAPE SSDQKQYQED MREAAENFVD NSPVGIGSSS ADIDEEQDNL  240
DELANASGTE FEIPASFDEQ IGIDSHMGAD WPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754406e-38HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433125.10.0PREDICTED: GATA transcription factor 17-like isoform X5
SwissprotQ6Z4335e-42GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A1S3WZH70.0A0A1S3WZH7_TOBAC; GATA transcription factor 17-like isoform X5
STRINGXP_009609384.11e-168(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-32ZIM-LIKE 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]