PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609386.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 326aa    MW: 35825.8 Da    PI: 4.7088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA503.9e-16185221135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_009609386.1 185 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 221
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513208.69976111IPR010399Tify domain
PfamPF062004.0E-580101IPR010399Tify domain
PROSITE profilePS5101712.709116158IPR010402CCT domain
PfamPF062039.7E-15116157IPR010402CCT domain
SMARTSM004014.9E-10179233IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12183232No hitNo description
Gene3DG3DSA:3.30.50.102.9E-15183225IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.63E-16184228No hitNo description
PROSITE patternPS003440185212IPR000679Zinc finger, GATA-type
PfamPF003201.5E-13185220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQV CSSMPPLAAS  60
PVVDSDGRVL AAMPMPSRRT SELTISFEGQ LYVFPAVTPD KSVDNDAPIR PNISRRIASL  120
IRFREKRKER CFEKKVRYTC RKEVAQRMHR KNGQFASLKD GEKTYAGNID SGDSIPHHEP  180
TLRRCQHCGI SESETPAMRR GPSGPRTLCN ACGLMWANKG MLRDITKGGR HVPFDKSEPR  240
TPDIKLPTVA PESSDQKQYQ EDMREAAENF VDNSPVGIGS SSADIDEEQD NLDELANASG  300
TEFEIPASFD EQIGIDSHMG ADWPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754407e-38HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609386.10.0PREDICTED: GATA transcription factor 19-like isoform X3
SwissprotQ5Z4U59e-48GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1S3WZZ10.0A0A1S3WZZ1_TOBAC; GATA transcription factor 19-like isoform X3
STRINGXP_009609384.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-37ZIM-LIKE 2