PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009609340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27468.4 Da PI: 10.0185 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.1 | 8.6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rqvtfskRrng+lKKA+ELS+LCdaev +iifsst kly+++s XP_009609340.1 10 RIDNITSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTAKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 78.7 | 1.5e-26 | 83 | 170 | 11 | 98 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + +q e+a+L+++++ Lq+ +R+llGe+L++Ls+k+L Le+qL+ sl++iR kK+++l+++i+el +k + + +en +L++k+ XP_009609340.1 83 MSEVKFWQGEAANLRQQLHYLQERHRQLLGEKLSRLSIKDLTDLENQLDMSLRSIRMKKEQILTDEIKELNRKGNIILQENIELNEKV 170 57889********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.89E-42 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-31 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-25 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.972 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIAIRR IDNITSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TAKLYDFAST 60 SMRSVIERYN KVMEEDHNLM NPMSEVKFWQ GEAANLRQQL HYLQERHRQL LGEKLSRLSI 120 KDLTDLENQL DMSLRSIRMK KEQILTDEIK ELNRKGNIIL QENIELNEKV NLVYQENIGL 180 QKKVYGTGGR NEANETPATH ATSNGYSFIN LQLSQPQGQR KDTSSNAMKL GLQLHYKAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 1e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 1e-20 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 1e-20 | 1 | 74 | 1 | 74 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018628660.1 | 1e-176 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 5e-92 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S4B1R8 | 1e-149 | A0A1S4B1R8_TOBAC; MADS-box transcription factor 23-like | ||||
STRING | XP_009609340.1 | 1e-176 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22630.1 | 3e-93 | AGAMOUS-like 17 |
Publications ? help Back to Top | |||
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