PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009609269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 449aa MW: 48386.7 Da PI: 4.7018 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.7e-16 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++++ ++G+g+Wk+I+r+ + Rt+ q+ s+ qk+ XP_009609269.1 98 AWTEEEHKLFLKGLDKYGKGDWKSISRHCVLSRTPQQVASHAQKF 142 7******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.5 | 8 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.38E-8 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.91E-4 | 12 | 57 | No hit | No description |
PROSITE profile | PS50090 | 4.623 | 12 | 57 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 19.942 | 91 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 92 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-16 | 93 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-16 | 95 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-11 | 95 | 145 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.05E-11 | 98 | 143 | No hit | No description |
Pfam | PF00249 | 4.3E-12 | 98 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSTDRTCNGS FWTKEEDKIF ENTLAVYSSD DDLLMMMAAA LPGKSLEDIK NHYEVLVEDV 60 NAIESGLVPL PRYRNMQSHS LNKSRLPKAD VERRKGVAWT EEEHKLFLKG LDKYGKGDWK 120 SISRHCVLSR TPQQVASHAQ KFFNRREGVN KERRRASIHD ITSVDIETAG TSQVPNPENM 180 IGPAGGGSQV TASTNDMTGA VDSGVVSTGV GTFTSPIAAI ENKSMLPQEI TIAEPEIVVS 240 GGESSGPGAA FVNEVSRLYH DVTDDFILGR DDLIVEQEVT YEAGIQVDTE RSLLPSQQPS 300 TAAGNEIYGH PVTRIGSELE ALITEHMVED NEISSIFDVG KTPSSHAMLS STAHSGMSSY 360 TVAAHSGMFS YTVAAHSGMS SYTVGSFGSN NAPENRVAAP GGGLTIDSQQ LPSIAPSSNF 420 SVGVCPNSNT SVRDEGIFYL GDLFTDHMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 8 | 74 | 7 | 74 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609269.1 | 0.0 | PREDICTED: uncharacterized protein LOC104103093 | ||||
Refseq | XP_009609270.1 | 0.0 | PREDICTED: uncharacterized protein LOC104103093 | ||||
TrEMBL | A0A1S3Y0Q8 | 0.0 | A0A1S3Y0Q8_TOBAC; uncharacterized protein LOC107770741 | ||||
STRING | XP_009609269.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4454 | 13 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-55 | MYB family protein |