PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009609000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 342aa MW: 38379.8 Da PI: 6.9629 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 205 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_009609000.1 205 YQPDICKDYKETGYCGYGDSCKFMHD 230 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.09E-9 | 203 | 235 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-10 | 205 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 205 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 8.2E-14 | 265 | 323 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 2.28E-13 | 281 | 324 | No hit | No description |
Pfam | PF13920 | 8.0E-9 | 281 | 323 | No hit | No description |
SMART | SM00184 | 8.2E-5 | 282 | 319 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.571 | 282 | 320 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 8.36E-9 | 282 | 323 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 297 | 306 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MENSNTPAFE SNPAEAETEQ PPTAPPSSSS VCNFFKKPSK GKNIRKRPTV VEGESDDAEG 60 ESSVIYTKKK PAIADNKLRF STGASKCNKA TESNVDSKAP VFHFESSKEI QVQNDSRATA 120 TLETETEFSK DARAIRERAL KQAEEALKGK SKTGGDEKLY KGMNQYTDYK AGLRREHTIS 180 SEKAGGAHGP LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQI 240 EKEWDEAEKE RKRKLAMGML DEDDEDAEKS DEDDDDALPF ACFICREPFV DPVVTKCKHY 300 FCEHCALKHH AKNKKCFVCN QPTLGIFNTA FEIRKRMAAQ GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 4e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
5z58_M | 4e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
6ff4_t | 4e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
6ff7_t | 4e-68 | 31 | 337 | 14 | 317 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609000.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_016502602.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Refseq | XP_018628567.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-160 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A1S4CMV0 | 0.0 | A0A1S4CMV0_TOBAC; zinc finger CCCH domain-containing protein 1-like | ||||
STRING | XP_009609000.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4403 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-155 | C3H family protein |