PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608930.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 549aa    MW: 59998.9 Da    PI: 8.0746
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.8e-1470109242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  XP_009608930.1  70 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 109
                     89**************************.********9875 PP
2TCR512.8e-16154193140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_009608930.1 154 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 193
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-1669109IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.77670194IPR005172CRC domain
PfamPF036382.0E-1171106IPR005172CRC domain
SMARTSM011148.4E-20154195IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12157192IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MPEQTKQIQP LVKSIQLQRP QTQQHMVLMP TKQTAVPTTH PSIRPPLKPD SPRARPRQSA  60
SEVKDGTPKK QKQCNCKHSR CLKLYCECFA SGIYCDGCNC NNCHNNVENE PARREAVEAT  120
LERNPHAFRP KIASSPHGAR DNKEEIGDVL VLAKHNKGCH CKKSGCLKKY CECFQANILC  180
SENCKCMDCK NFEGSEERQA LFHGDHANNM AYLQQAANAA ITGAIGSSGY GLSPVNKKRK  240
GQELFFGSSV KEPVHRHGQS QQGNHIKASV LPSLSSVPGP CVGNAATVGP SKFTYRSLLA  300
DLIQPQDLKE LCSVLVLHSG EAAKMLADEK DASIKQAEGQ REASLASSTQ ERVQNQKDSG  360
TEKDMLDCCS SGDQGEKISV EESSLDGADV SKRPMSPGTL ALMCDESHTM FSAAVASPND  420
LATLNCNTSS QLPHGQGMTE TYAEQERIVL MKFRDCLNRL VDLGQLKERK CSSMIRGADP  480
VDQKDMIGNG FTTTEMRNQH DSLNNGVAKS ALPQPRTTQL FSAVVTTANN NPFPKVHRPD  540
ENGDVKPKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-32622032132Protein lin-54 homolog
5fd3_B7e-32622032132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514944.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
SwissprotQ9SZD11e-180TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S4DP780.0A0A1S4DP78_TOBAC; protein tesmin/TSO1-like CXC 6 isoform X1
STRINGXP_009608929.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein