PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009608929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CPP | ||||||||
Protein Properties | Length: 611aa MW: 66308.8 Da PI: 7.8303 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45 | 2.1e-14 | 132 | 171 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C++C+N+ e+ XP_009608929.1 132 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 171 89**************************.********9875 PP | |||||||
2 | TCR | 50.8 | 3.2e-16 | 216 | 255 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_009608929.1 216 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 255 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.2E-16 | 131 | 171 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.776 | 132 | 256 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.3E-11 | 133 | 168 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 216 | 257 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 219 | 254 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 611 aa Download sequence Send to blast |
MENSEGGDFF PPNKAQSEVA VSADAATTVQ PQVAVDFPAK KLARQLDFTV FGGSGGQSPG 60 TAMPEQTKQI QPLVKSIQLQ RPQTQQHMVL MPTKQTAVPT THPSIRPPLK PDSPRARPRQ 120 SASEVKDGTP KKQKQCNCKH SRCLKLYCEC FASGIYCDGC NCNNCHNNVE NEPARREAVE 180 ATLERNPHAF RPKIASSPHG ARDNKEEIGD VLVLAKHNKG CHCKKSGCLK KYCECFQANI 240 LCSENCKCMD CKNFEGSEER QALFHGDHAN NMAYLQQAAN AAITGAIGSS GYGLSPVNKK 300 RKGQELFFGS SVKEPVHRHG QSQQGNHIKA SVLPSLSSVP GPCVGNAATV GPSKFTYRSL 360 LADLIQPQDL KELCSVLVLH SGEAAKMLAD EKDASIKQAE GQREASLASS TQERVQNQKD 420 SGTEKDMLDC CSSGDQGEKI SVEESSLDGA DVSKRPMSPG TLALMCDESH TMFSAAVASP 480 NDLATLNCNT SSQLPHGQGM TETYAEQERI VLMKFRDCLN RLVDLGQLKE RKCSSMIRGA 540 DPVDQKDMIG NGFTTTEMRN QHDSLNNGVA KSALPQPRTT QLFSAVVTTA NNNPFPKVHR 600 PDENGDVKPK I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-31 | 124 | 265 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-31 | 124 | 265 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608929.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A1S4DP78 | 0.0 | A0A1S4DP78_TOBAC; protein tesmin/TSO1-like CXC 6 isoform X1 | ||||
STRING | XP_009608929.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-175 | Tesmin/TSO1-like CXC domain-containing protein |