PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009608704.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 165aa MW: 19163.1 Da PI: 9.8862

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	17	52	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009608704.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52 5***************99.******9.8999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-10	11	62	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-4	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-5	17	58	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-6	17	53	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-5	18	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM 60 AYLSLPEGTA SAVGLIALIS DHYCYLLWPR CRTRFRNSSN GSRAWCRRNH TPSVLGWSYQ 120 RVDGRPAVIV SFFFRTVIVR ASSRDYSHFF LCRPREGCCN EAPKC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608701.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Refseq	XP_009608703.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Refseq	XP_009608704.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Refseq	XP_009608705.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Refseq	XP_009608707.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X3
Refseq	XP_016461650.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_016461651.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_016461652.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_016461653.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Refseq	XP_016461654.1	1e-122	PREDICTED: protein ALWAYS EARLY 3-like isoform X2
Swissprot	Q6A332	2e-31	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3ZBP4	1e-121	A0A1S3ZBP4_TOBAC; protein ALWAYS EARLY 3-like isoform X2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	8e-34	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]