PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009608703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 165aa MW: 19163.1 Da PI: 9.8862 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 17 | 52 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009608703.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52 5*****************99.********9.8999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-10 | 11 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-4 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-5 | 17 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 17 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-5 | 18 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM 60 AYLSLPEGTA SAVGLIALIS DHYCYLLWPR CRTRFRNSSN GSRAWCRRNH TPSVLGWSYQ 120 RVDGRPAVIV SFFFRTVIVR ASSRDYSHFF LCRPREGCCN EAPKC |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608701.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X3 | ||||
Refseq | XP_009608703.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X3 | ||||
Refseq | XP_009608704.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X3 | ||||
Refseq | XP_009608705.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X3 | ||||
Refseq | XP_009608707.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X3 | ||||
Refseq | XP_016461650.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X2 | ||||
Refseq | XP_016461651.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X2 | ||||
Refseq | XP_016461652.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X2 | ||||
Refseq | XP_016461653.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X2 | ||||
Refseq | XP_016461654.1 | 1e-122 | PREDICTED: protein ALWAYS EARLY 3-like isoform X2 | ||||
Swissprot | Q6A332 | 2e-31 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A1S3ZBP4 | 1e-121 | A0A1S3ZBP4_TOBAC; protein ALWAYS EARLY 3-like isoform X2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21430.2 | 8e-34 | DNA binding |
Publications ? help Back to Top | |||
---|---|---|---|
|