PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608675.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 301aa    MW: 34991.3 Da    PI: 6.2981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608675.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009161185123
                     EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                     + C+ C+k ++  ++++ H+++  H
  XP_009608675.1 161 FFCELCNKQYKLAMEFEAHLSSydH 185
                     67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004431.1E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.73366111IPR000467G-patch domain
PfamPF015853.1E-1567107IPR000467G-patch domain
PfamPF121715.0E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDRWFNGRP ELRMRDKRQQ EMEQADEASV LEDLAEDFRL PINHRPTENV DLENVEQASL  60
ETQLPSSNIG FRLLQKMGWK GKGLGKNEQG ITEPIKSGMR DPKLGIGKQE EDDYFTAEEN  120
IQRRKLDIER EETEELAKKR EVLAEREHKI ETEVKEIRKV FFCELCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGS SRDDRQKREQ QRQEREMAKF AQMAANKKQE ELQTPEEAGN  240
IPAPSMVRTA TALADQDQRK TLKFGFSAKG GSSKTTTLVN KAAKKPKVTV VSVFSNESDE  300
E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402223e-80AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence.
GenBankHG9754403e-80HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755133e-80HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608675.10.0PREDICTED: G patch domain-containing protein 8
RefseqXP_016499515.10.0PREDICTED: G patch domain-containing protein 8-like
TrEMBLA0A1S4CED20.0A0A1S4CED2_TOBAC; G patch domain-containing protein 8-like
STRINGXP_009608675.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86041415