PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608156.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 329aa    MW: 37251.8 Da    PI: 8.7485
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.11.3e-371212784135
             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.sec.. 73 
                      kdrhski T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl +++ +i el++                         +s+ sec  
  XP_009608156.1 121 NKDRHSKINTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLIKSESEIEELAKGnkgggipkqscsttngigaistA-ISSiSECev 214
                     69***********************************************************999988877777666666655431.222344544 PP

             TCP  74 .eaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                      +  ++s        +       k ak a k+  ++++ a++  l   e+r++arararert+ k+++ ++
  XP_009608156.1 215 iSGTDESF-------SitykkklKTAKGASKKTAKTARRAAFDRLITrETRNQARARARERTKIKKSLGKS 278
                     43333333.......144544446666666555555555556666666**************999887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.4E-42120273IPR005333Transcription factor, TCP
PROSITE profilePS5136933.753121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.494255272IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MYPPSNSCNY SPIFNIPSPC MQYGDELFFQ YYPDHFLQQQ QVPLIEDQSV DILADCTENV  60
TNEETVINTD TVKVLYDTGA VTNSQCWGGN EEVEEGRENK RNDMRSTISI IHVRKNKKCS  120
NKDRHSKINT ARGLRDRRMR LSLDAARKFF SLQDMLGFDK ASKTVEWLLI KSESEIEELA  180
KGNKGGGIPK QSCSTTNGIG AISTAISSIS ECEVISGTDE SFSITYKKKL KTAKGASKKT  240
AKTARRAAFD RLITRETRNQ ARARARERTK IKKSLGKSKE NSADYCNLVD NYGDWSQFSI  300
FNYQKNAVGI SHDQQFTDFQ FCGNKLWEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608156.10.0PREDICTED: transcription factor TCP12-like isoform X2
RefseqXP_016448763.10.0PREDICTED: transcription factor TCP12-like isoform X2
TrEMBLA0A1S3Y9R00.0A0A1S3Y9R0_TOBAC; transcription factor TCP12-like isoform X2
STRINGXP_009608155.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-19TCP family protein