PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009608155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 330aa MW: 37380 Da PI: 8.7485 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.1 | 1.3e-37 | 121 | 278 | 4 | 135 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.sec.. 73 kdrhski T++g+RdRR+Rls++ a++fF Lqd+LGfdk+skt+eWLl +++ +i el++ +s+ sec XP_009608155.1 121 NKDRHSKINTARGLRDRRMRLSLDAARKFFSLQDMLGFDKASKTVEWLLIKSESEIEELAKGnkgggipkqscsttngigaistA-ISSiSECev 214 69***********************************************************999988877777666666655431.222344544 PP TCP 74 .eaesssssasnsssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135 + ++s + k ak a k+ ++++ a++ l e+r++arararert+ k+++ ++ XP_009608155.1 215 iSGTDESF-------SitykkklKTAKGASKKTAKTARRAAFDRLITrETRNQARARARERTKIKKSLGKS 278 43333333.......144544446666666555555555556666666**************999887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-42 | 120 | 273 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.753 | 121 | 179 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.494 | 255 | 272 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MYPPSNSCNY SPIFNIPSPC MQYGDELFFQ YYPDHFLQQQ QVPLIEDQSV DILADCTENV 60 TNEETVINTD TVKVLYDTGA VTNSQCWGGN EEVEEGRENK RNDMRSTISI IHVRKNKKCS 120 NKDRHSKINT ARGLRDRRMR LSLDAARKFF SLQDMLGFDK ASKTVEWLLI KSESEIEELA 180 KGNKGGGIPK QSCSTTNGIG AISTAISSIS ECEVISGTDE SFSITYKKKL KTAKGASKKT 240 AKTARRAAFD RLITRETRNQ ARARARERTK IKKSLGKSKE NSADYCNLVD NYGDWSQFSI 300 FNYQKNAVGI SHDQQQFTDF QFCGNKLWEV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608155.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like isoform X1 | ||||
Refseq | XP_016448762.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like isoform X1 | ||||
TrEMBL | A0A1S3Y9V9 | 0.0 | A0A1S3Y9V9_TOBAC; transcription factor CYCLOIDEA-like isoform X1 | ||||
STRING | XP_009608155.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 8e-19 | TCP family protein |