PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009608132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 386aa MW: 43365.7 Da PI: 7.1836 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.2e-06 | 144 | 164 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd C FaHg XP_009608132.1 144 ACPDFRK-GNCRKGDGCEFAHG 164 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.3E-4 | 139 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 140 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 143 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.648 | 174 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5 | 174 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MMIGERNHPY PTVHIPPWSY GDNQTDNMHL TLSPNGNANS NPSFSAASGE DYSMFLQNDA 60 GLKALQRYLP FNDVVGDFDF EYGEGKDIDL PVDAYSCDQF RMYEFKVRKC ARGKSHDWTE 120 CPYAHPGEKA RRRDPRKYHY SGTACPDFRK GNCRKGDGCE FAHGVFECWL HPARYRTQPC 180 KDGLNCKRRV CFFAHSPEQI RVLSPRADSF DGSPSISRYG FEGKNMHFIQ SPESGSPPCE 240 SPPMSPMTQT TNSVSSLSRS LGSNYSINEM VASLRQLQLN KVKSMPSSWN LQMGSPVLGS 300 PRLPVNRPGF CSLPSTPTRA FNRPGVCCFD LCEEEPAMER VESGRDLRAK MFEKLSKENP 360 LDGMVPDPVR SEAPNPDVGW VSELIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009608132.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Refseq | XP_016445906.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-123 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1S3Y1A1 | 0.0 | A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like | ||||
STRING | XP_009608132.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-117 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|