PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607861.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 204aa    MW: 23231.2 Da    PI: 9.4326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.1e-1267117255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g ++ eIrdp     r  +r +lg++ t e+ a a+++   kl+g
  XP_009607861.1  67 RYRGVRRRP-WGTFATEIRDPI----RkgARLWLGTYETSEDVALAYDRSTYKLRG 117
                     7********.**********72....235********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-2567131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-2767126IPR001471AP2/ERF domain
PROSITE profilePS5103222.48467125IPR001471AP2/ERF domain
PfamPF008474.2E-867117IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-1867126IPR016177DNA-binding domain
PRINTSPR003671.4E-86879IPR001471AP2/ERF domain
CDDcd000181.27E-1975127No hitNo description
PRINTSPR003671.4E-891107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQPGISSEIF DLSNILCYDS MEHDFSENSS FSEISNEKGD TTPTSLQPCH DLGSTERGVH  60
APPNWRRYRG VRRRPWGTFA TEIRDPIRKG ARLWLGTYET SEDVALAYDR STYKLRGARA  120
LLNFPHLIGS NVVELNRVKP KKRLRSLELS FPSQTTTECT TPNLKKRNVA LINSLTKANF  180
NTHSILERGL SWELLPNTYF GLNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2866125160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144KPKKRLR
2139145PKKRLRS
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607861.11e-151PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ8L9K13e-34ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A1J6ISP22e-61A0A1J6ISP2_NICAT; Ethylene-responsive transcription factor 13
TrEMBLA0A2G2XMS12e-60A0A2G2XMS1_CAPBA; Ethylene-responsive transcription factor 2
STRINGXP_009607861.11e-150(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-30ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]