PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607455.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 366aa    MW: 41234.7 Da    PI: 5.4555
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.61.7e-3293194173
             TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................s 66 
                     a+g+kdrhsk++T++g+RdRRvRls ++a++f+d+qd+LG+ ++s++i+WL+++ak+ai++l +                              +
  XP_009607455.1  93 ATGRKDRHSKVSTAKGPRDRRVRLSPNTAIQFYDVQDRLGYGRPSEAIDWLIKKAKAAIDALGEFpklnakmqysfdqlldeskvqsprfrqqnC 187
                     589***********************************************************988767665555555555555444444444443 PP

             TCP  67 sssasec 73 
                      +++sec
  XP_009607455.1 188 GIPNSEC 194
                     3333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3094203IPR005333Transcription factor, TCP
PROSITE profilePS5136930.60296154IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MNHQLQISSE EDGSSEEEED EEEVFQKNGI ENLDSHCQNQ NLQQLPMPLC PKPAKWANFT  60
TYKEELNKVT KGMKLKRAKQ DVIEVDRGRI IRATGRKDRH SKVSTAKGPR DRRVRLSPNT  120
AIQFYDVQDR LGYGRPSEAI DWLIKKAKAA IDALGEFPKL NAKMQYSFDQ LLDESKVQSP  180
RFRQQNCGIP NSECGVLQNH QQEVNYDIPI QNVSLFSSAD GAKIPFFSEF QSHFLNFQSF  240
QEDTIFSSSD HQDSLLTTSI NPLDSNSNLE MTRYKRSLNG NVASSNSGNG EDYSSFSLLA  300
HHFPSVLSEK QVISHREPLQ SSFFPLISGD TLSTQLQTLS YDGLSGQISS APRIQGEEEQ  360
GTFSAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-18101154154Putative transcription factor PCF6
5zkt_B3e-18101154154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018628112.10.0PREDICTED: transcription factor TCP3-like
TrEMBLA0A1J6IMU10.0A0A1J6IMU1_NICAT; Transcription factor tcp4
TrEMBLA0A1S3Y9150.0A0A1S3Y915_TOBAC; uncharacterized protein LOC107773633
STRINGXP_009607455.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-26TCP domain protein 10