PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009607241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 328aa MW: 36287.4 Da PI: 6.8235 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 57 | 116 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++kcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s XP_009607241.1 57 DYSIKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 116 5679*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-29 | 50 | 110 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-33 | 59 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.031 | 60 | 114 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 62 | 98 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MGISSLQVCM DSSDWLQGTI HEEGAAGIDS SSLPISEDIL TCSRPLIVER RLRPPHDYSI 60 KCPRCDSTHT KFCYYNNYSL SQPRYFCKTC RRYWTKGGTL RNIPVGGGCR KNKKVSSKKS 120 NIETANNQNS SISNNNPTDL QLSFPDQMPP FSHHHFMSSN NFGQGNNFML ENPTAIDFME 180 SKYEALVGCT TSRNQDFLGN GNVGMISSPT GFGHEINSHG NIIAPNFAFG MTTMDAGNNF 240 GITVMDSSHH HQRLMLPNYE NNQHEEQIIN AVDVKPNPKI LSLEWHDQVQ GCSDTGKESF 300 GYYSSVGGLG SWTGLMNGYG SSATNPLV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607241.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.6-like | ||||
Refseq | XP_016487459.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.6-like | ||||
TrEMBL | A0A1S4BEZ3 | 0.0 | A0A1S4BEZ3_TOBAC; dof zinc finger protein DOF5.6-like | ||||
STRING | XP_009607241.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4895 | 22 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 4e-56 | Dof family protein |