PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009607228.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 15775.9 Da PI: 10.5981 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 133.4 | 2.8e-41 | 29 | 106 | 95 | 170 |
YABBY 95 svssekl.senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ ++++ +++ + pr ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl XP_009607228.1 29 SKCNSRMaVRSSLTKNPREETiANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 106 22222231344455556655558*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-41 | 13 | 106 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.88E-8 | 46 | 99 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.0E-4 | 60 | 98 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MWTVNMAAAF SQVSNYTSPE YKIDFGSSSK CNSRMAVRSS LTKNPREETI ANRPPEKRQR 60 VPSAYNQFIK EEIQRIKANN PDITHREAFS TAAKNWAHFP HIHFGLTLET KNQAKLENAE 120 KHIMHRAALP KIKTFTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607227.1 | 7e-99 | PREDICTED: axial regulator YABBY 5-like | ||||
Refseq | XP_016489012.1 | 7e-99 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 1e-49 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S4BJP6 | 2e-97 | A0A1S4BJP6_TOBAC; axial regulator YABBY 5-like | ||||
STRING | XP_009607227.1 | 3e-98 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-52 | YABBY family protein |
Publications ? help Back to Top | |||
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