PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607017.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 261aa    MW: 29706.9 Da    PI: 8.4744
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.93.2e-3066123260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     + v+YkeClkNhAa++Gg+a+DGCgEfmps geegt + l+C+ C+CHRnFHR+e+e e
  XP_009607017.1  66 KMVKYKECLKNHAAAMGGNATDGCGEFMPS-GEEGTFEFLTCSVCNCHRNFHRKETEGE 123
                     6799*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2768120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2568124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2969119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.34670119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.0E-18183249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-29184250IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-27188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEVPNEEGEM AMPINSTYGH EHMIYHDTAP QNNHIITPPQ IVTSKNGPPI STSTLETSDN  60
VVPYKKMVKY KECLKNHAAA MGGNATDGCG EFMPSGEEGT FEFLTCSVCN CHRNFHRKET  120
EGELIRKVYV GHPHKAFVYA ASRAAPHQMI MSYNNHLGSF PYIEQEDGII NGGCGVMARP  180
LNYQQLVKKR FRTKFSQEQK EKMLNFAEKI GWKMQKQEDA MVQQFCQEVG VKRRVLKVWM  240
HNNKHSLAKK NSNDINLQSQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-241872461675ZF-HD homeobox family protein
1wh7_A3e-241892461875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607017.10.0PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S02e-76ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S4DA580.0A0A1S4DA58_TOBAC; zinc-finger homeodomain protein 4-like
STRINGXP_009607017.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.29e-79homeobox protein 31