PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 17284.2 Da PI: 5.0563 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H XP_009606984.1 27 YRCSFCNRGFSNAQALGGHMNIH 49 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.57E-7 | 24 | 53 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 24 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0025 | 27 | 49 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.78 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MGSDLNSSNF EITWKSDELG LSQAKFYRCS FCNRGFSNAQ ALGGHMNIHR KDRAKLREVP 60 SEISSDDTSS PSKRPCEEHH HYHPISKAKD NDELIIRGDI LQLPLFVDFP SKEVINCVET 120 QEGNKGMQLS DDSELDLELR LGPEPPESSM KSY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606984.1 | 1e-111 | PREDICTED: transcriptional regulator TAC1-like | ||||
Refseq | XP_016480947.1 | 1e-111 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A1S4AWE5 | 1e-110 | A0A1S4AWE5_TOBAC; transcriptional regulator TAC1-like | ||||
STRING | XP_009606984.1 | 1e-111 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7463 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 3e-17 | C2H2 family protein |