PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606951.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 447aa    MW: 48335.7 Da    PI: 6.7266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20223272255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_009606951.1 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-37223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33223281IPR001471AP2/ERF domain
PROSITE profilePS5103225.712223280IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22223281IPR016177DNA-binding domain
PfamPF008474.0E-14223272IPR001471AP2/ERF domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000182.95E-15231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MCLLKVANPR KSSEYVRFTD TGDSETTTTT AAEGGAQPYG QSDQCFEEMI QQQIQQEADY  60
LLSTSSAMPM FTGYSQTREM SAMVTALTHV VSGSNYRPDI SGSVTTSFGG GGSGIYSANS  120
PSSAYSSTSS GSRAGQKRSR DQEESVTQIL EQSHQGVYGG FGEFRGGLPS SSVKAEEATS  180
MVAPTISTIT TVPAFTTTTT TAEIATTAAG GTSEETGGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVRLLPQIQ ASQPTTRLAI  300
SSSSTSASQF SFMAPISQPT PFFQPPHHHQ QPIQSSDMTR DYWEYSQLLQ NPADFFDQQQ  360
PSSLVEQMFF ASSRAVLHSN TTSSLGNSAA SSTSSPSYPL LFSGQQSSYY RPQTNQNQGT  420
SSSSSSNSSN FSAPFWSSSS HYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23222283163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-55HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606951.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A314KM120.0A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009606951.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein