PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009606739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 322aa MW: 35201.4 Da PI: 4.8287 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.9 | 2.5e-36 | 25 | 116 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++lisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++ XP_009606739.1 25 FLTKTYQLVDDPAIDDLISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKGLLRD 110 9*****************************************************************99.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_009606739.1 111 IQRRKI 116 ***985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.9E-38 | 16 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.2E-59 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.9E-36 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 9.0E-21 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.2E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-21 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.0E-21 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 2.7E-4 | 186 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MVPLPVEQSG ESTAGENQRS LPTPFLTKTY QLVDDPAIDD LISWNEDGTT FIVWKPAEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RRGEKGLLRD IQRRKISPAG 120 TAVTAVSPTI AVNAAQTVTI AVAPAVRMAS PSNSGDEQVL SSNSSPAATA AAAVVLRTTT 180 CTTTPELLEE NERLRKENAQ LSEELNRLRS LCNNVYNLMS NYTGNPSETP AGIPEGRVLE 240 LLPTGQVAAE VDGGATATPA ECSGVKAEED ISPRLFGVSI GVKRVRRSSE EESEREGRVQ 300 DQVQLHGSDV KSEPLPWIDR LG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-27 | 25 | 117 | 20 | 123 | Heat shock factor protein 1 |
5d5u_B | 6e-27 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-27 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-27 | 25 | 114 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 2e-78 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606739.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b isoform X1 | ||||
Swissprot | Q9T0D3 | 1e-106 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | A0A1S3YDJ3 | 0.0 | A0A1S3YDJ3_TOBAC; heat stress transcription factor B-2b-like | ||||
STRING | XP_009606739.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2182 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11660.1 | 9e-89 | HSF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|