PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606597.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 156aa    MW: 17929.1 Da    PI: 10.1051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.85e-172473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  XP_009606597.1 24 PYRGIRKRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 73
                    69****999.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.7E-362487IPR001471AP2/ERF domain
PROSITE profilePS5103222.4712481IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202482IPR016177DNA-binding domain
PfamPF008478.6E-112573IPR001471AP2/ERF domain
CDDcd000187.94E-282581No hitNo description
PRINTSPR003674.8E-122536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-292582IPR001471AP2/ERF domain
PRINTSPR003674.8E-126383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEGGSCCSRT EKKNKRQNSQ QEKPYRGIRK RKWGKWVAEI REPNKRSRIW LGSYSSPVAA  60
ARAYDTAVFY LRGPSAKLNF PQFIVNENHE LHNNLSSSDI RKKATEVGAK VDANMQTTTN  120
STESNNFISN SKSKWLSMKP DLNEYPSPEI WEELDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152381463ATERF1
3gcc_A2e-152381463ATERF1
5wx9_A2e-1525821573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606597.11e-114PREDICTED: ethylene-responsive transcription factor ERF011-like
RefseqXP_016435760.11e-114PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE17e-46ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A1S3X6Z21e-112A0A1S3X6Z2_TOBAC; ethylene-responsive transcription factor ERF011-like
STRINGXP_009606597.11e-113(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.13e-48cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]