PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 31419.1 Da PI: 5.9844 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 91 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+++AeIrd + ng r++lg+f+++e Aa a+++a+ ++g XP_009606435.1 91 SFRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAALAYDQAAFLMRG 141 59*******.**********44465..**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.18E-19 | 90 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 91 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 91 | 149 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-38 | 91 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 92 | 151 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.3E-12 | 92 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-12 | 131 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MDSSSCSSHF FYPMNSDLSS DSSWEWSNLN STSLPFNVND SEEMLLFGVL TNTAQETTSE 60 TVTSYHVKEE EVSSKSKVIK EIEEKPAKEK SFRGVRRRPW GKFAAEIRDS TRNGVRVWLG 120 TFDSPEAAAL AYDQAAFLMR GTSAILNFPV ETVQESLRDM KCHVDEECSP VVALKKRHSL 180 RKKSLSSKKS NSSSNSKVVR EVKMENVNVV VFEDLGPDYL EQLLSSSSSD HSSCNEAFLM 240 VNQRFTQLCI YXIYLYYFCL FSFRGREIGE FHLFVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-29 | 87 | 150 | 1 | 64 | ATERF1 |
3gcc_A | 6e-29 | 87 | 150 | 1 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | NTU81157 | 0.0 | U81157.1 Nicotiana tabacum S25-XP1 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606435.2 | 1e-174 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_016476348.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-67 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1S4AIU7 | 1e-173 | A0A1S4AIU7_TOBAC; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009606435.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-47 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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