PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606133.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 283aa    MW: 31136.6 Da    PI: 8.1256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-3097156159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009606133.1  97 MNDGCHWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCVEDMSILITTYEGTHNHP 156
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3282158IPR003657WRKY domain
SuperFamilySSF1182907.85E-2891158IPR003657WRKY domain
PROSITE profilePS5081129.20792158IPR003657WRKY domain
SMARTSM007743.5E-3697157IPR003657WRKY domain
PfamPF031065.6E-2798156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNKRTHSPAS QENDIGDGEL ALSLTLLSSG SNASKVEADE ERKKKQEDAT TTGYLPIQSS  60
NNSHGSNFGG ITSQVMNSPP NRKARVSIRA KCEAATMNDG CHWRKYGQKI AKGNPCPRAY  120
YRCTVAPGCP VRKQVQRCVE DMSILITTYE GTHNHPLPVA MASTAGSFTL VDSSINPLLS  180
NGTSNLLNET FFPSPYHIIN SSSSPYTSNL RNNLYNHEQY PIVNSFSNTS LSEAAQLGNS  240
WFPKPSNYER NTIGNNIFTA YKLADIIHNE MGPQFEGNNN NYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-2284158174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606133.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F02e-57WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1S4BPP80.0A0A1S4BPP8_TOBAC; probable WRKY transcription factor 9 isoform X2
TrEMBLA0A1S4BPS30.0A0A1S4BPS3_TOBAC; probable WRKY transcription factor 9 isoform X1
STRINGXP_009606133.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-58WRKY DNA-binding protein 9