PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 511aa MW: 57578.4 Da PI: 7.3519 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 325 | 357 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + XP_009606015.1 325 HPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 357 89*****************************88 PP | |||||||
2 | BELL | 104.1 | 9.9e-34 | 185 | 254 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+ kkk++L+ +l+eV++rYkqy++qlq+v+ sFe vaglg+a+p+++lAlk++S+hF cLk+ai++q+ XP_009606015.1 185 DEHGKKKSRLILMLHEVYQRYKQYHQQLQMVVTSFESVAGLGNAAPFANLALKTMSKHFNCLKNAITDQL 254 5899***************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.2E-43 | 124 | 252 | IPR006563 | POX domain |
Pfam | PF07526 | 9.4E-34 | 129 | 251 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.872 | 298 | 361 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-10 | 301 | 365 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-11 | 301 | 362 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-17 | 303 | 367 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 304 | 365 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-18 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MAEGFEPYHV PQQSRRDKLR VLVDDNLQLQ NYPSCLVPLY DPSIISSDLP SFQEINGTPF 60 FYTPQNLRFL DQSIRTSGED MVHNNNNNNT NGQGLSLSLS SLHHNTTNHD FLSKSSCVPL 120 GPFTGYSLIL KRSRFLKPAQ LLLEELSCDV GREIYAEKLA ADDFSLMDPS HENIVVDRQD 180 CSNGDEHGKK KSRLILMLHE VYQRYKQYHQ QLQMVVTSFE SVAGLGNAAP FANLALKTMS 240 KHFNCLKNAI TDQLQFTNES RHGQRNCERD PIPRVGKGLY CQRPDQIHNN AGFADRTQPI 300 WRPQRGLPER AVTVLRAWLF DHFLHPYPTD TDKVMLAKQT GLSRNQVSNW FINARVRLWK 360 PMVEEIHMLE TKEAHNKASQ REGHNSNNNN NSIEHFPTSN SHAACETPST SAPRLQDTPP 420 KRTRNDFPMG NADSISLSYG NLSTGTSGVS LTLGLHQNTG IGLSEPFPIN AARRFGIDAN 480 SDRFIVGGFE EQNGQFGRNF VGGQFLHDFA G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 3e-15 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-15 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606015.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-110 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1S3X8A1 | 0.0 | A0A1S3X8A1_TOBAC; BEL1-like homeodomain protein 9 | ||||
STRING | XP_009606015.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3520 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-111 | TALE family protein |