PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605979.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 581aa    MW: 63933.7 Da    PI: 8.4775
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23122223199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +
  XP_009605979.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAE 212
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_009605979.1 213 NGDLCVGIRRA 223
                     8999****997 PP
2Auxin_resp111.67.7e-37290372283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ a++++ Fev+Y+Prast+eF++k++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  XP_009605979.1 290 ANLAASGQSFEVIYYPRASTPEFCIKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMRWPDSPWRLLQ 372
                     67899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-38113226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29115225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-21121222No hitNo description
PfamPF023626.6E-22122223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF065075.6E-32290372IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MITFMDPKDK VKEIDKCLDS QLWHACAGSM VQMPPISSKV FYFPQGHSEH ACGNVDFRSS  60
NIRIPSYIPC KVSGIKYMAD PETDEVFAKI RLIPVSRNEV EFNDDGVVGM NGSDNQDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPA  240
GGNCMVPYGG FSSFLREDEN KLMRNGGNGN NSGSLMSRGK VKAESVIESA NLAASGQSFE  300
VIYYPRASTP EFCIKASLVK SALQIRWCSG MRFKMPFETE DSSRISWFMG TISSVQVADP  360
MRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD  420
FPLDGHHLPM PTFSGNHLLG PSSPFGCLPD NTPAGMQGAR HAQYGLSLSD IHLSKLHSSL  480
FPVGFPPLDQ AAANPRPPNS PMIRKPCNSE NISCLLTMGN STHETTKKSD IGKAPQLVLF  540
GQPILTEQQI SLSCSGDTVS TVRTGNSSSD GNADKIVRTK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-80839341388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605979.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S4AFW30.0A0A1S4AFW3_TOBAC; Auxin response factor
STRINGXP_009605978.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]