PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 386aa MW: 42210.7 Da PI: 6.1371 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.4e-18 | 307 | 341 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l XP_009605872.1 307 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 341 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.939 | 301 | 337 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.3E-16 | 301 | 355 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 303 | 364 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.0E-15 | 305 | 339 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.36E-14 | 306 | 354 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 307 | 332 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.6E-16 | 307 | 341 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MLYRTQHHSF FSPFNPFTFS SSLSPHPFPP SSSSSPSPLS HSPSDQGMDC VEGALKSSFM 60 SEAALKTTHQ QAYGDDLWAN GNGQNVVSGD DFFVDDLLDF SNGFVEEQGE EEKGEDNAVH 120 KICSVSVSVS PQKQLEDKEA EKENGTVFPP AKEDFDSLPG SELIVPADDL DSLEWLSHFV 180 EDSFSEYSLT YPAGKLPVKP VVNQLEDGEI PVQEKSCFTT PVQTKARTKR GRTSVRIWPV 240 GSGSLSESSS SSSSSSSTTS LSSSPSNWVL YQIPVHTAES PGKPLAKKPK RKPAVQGGNG 300 PQQPRRCSHC GVQKTPQWRA GPMGAKTLCN ACGVRYKSGR LLPEYRPACS PTFSTELHSN 360 NHRKVLEMRR KKEFEESGSD QPVQSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605872.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
Refseq | XP_016503658.1 | 0.0 | PREDICTED: GATA transcription factor 5-like | ||||
Swissprot | Q9FH57 | 3e-75 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A1S4CRB8 | 0.0 | A0A1S4CRB8_TOBAC; GATA transcription factor | ||||
STRING | XP_009605872.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-69 | GATA transcription factor 5 |