PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605853.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 724aa    MW: 80466.7 Da    PI: 7.1669
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-095075441954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_009605853.1 507 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 544
                     664459******************************88 PP
2BELL118.14.2e-38368438272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     r  +q++k kLls+ +eVdkrY++y+eq+q+v++sF+ v+g g+a+pYt+lA+ka+SrhF+cLkdaia q+
  XP_009605853.1 368 RIGHQRRKIKLLSMFDEVDKRYNHYCEQMQMVVNSFDLVMGFGAAAPYTALAQKAMSRHFKCLKDAIAAQL 438
                     6679****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-72291436IPR006563POX domain
PfamPF075268.9E-52296435IPR006563POX domain
PROSITE profilePS5007112.487485548IPR001356Homeobox domain
SMARTSM003894.0E-9488552IPR001356Homeobox domain
CDDcd000868.43E-12488549No hitNo description
SuperFamilySSF466896.42E-17490554IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28491554IPR009057Homeodomain-like
PfamPF059203.6E-18505544IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MRWSYTLTNL RPSIIQFSSQ KSPFLWIILM SQDYHHQGLF SFSSVFEKPQ NEQQQHIAHQ  60
IRQEKLRVEG FNPPPPLVAI EEEQSSGLQV YGTAGMLSEM FNFPPGTTTA TATELLQNQL  120
TQCYRHPNQR PQQQLPWTTN LGSEWFSNRQ GMVVGGSLQR QHNQISSINA AESAMNLFAM  180
NPQPRSPSPS SSHPTTTTLQ GFPNAGGGHF GQFICGGASN TGNNFTNEIG GVNVIEGQGL  240
SLSLSSSLQH LEAAKVEDQL RMSGEEMLFF NQGTSENHHH HQVHVGFGSS LGLVNVLRNS  300
KYAKAAQELL EEFCSVGRSQ LFKKNKVSRN NNTTTSSNPN SNNPSRSNNH NTNSSSSKDL  360
PPLSAADRIG HQRRKIKLLS MFDEVDKRYN HYCEQMQMVV NSFDLVMGFG AAAPYTALAQ  420
KAMSRHFKCL KDAIAAQLKH SCELLGEKDT TTSGLTKGET PRLKLLEKSL RQQQTAFHQM  480
GMMDAEAWRP QRGLPERSVT ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN  540
ARVRLWKPMV EDMYQKEAKE EEDDEMEKSQ NSSNNIAQTP TPNSSTNTIT TGTGTETKTA  600
ATVAATILTV ASDKRSEINV LENDPSIVAM NRLCFSENQA QHHESSSMAT HEMAHNNFPA  660
IQDSDDMSRR EAVSGVEYGT TNIMANSDNG TRVIRFGTSV AGDVSLTLGL HHAGNLPENS  720
HFFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15494551562Homeobox protein Meis2
3k2a_B2e-15494551562Homeobox protein Meis2
4xrm_A2e-15494551562Homeobox protein Meis2
4xrm_B2e-15494551562Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444840.10.0PREDICTED: BEL1-like homeodomain protein 4 isoform X2
TrEMBLA0A1S3XY680.0A0A1S3XY68_TOBAC; BEL1-like homeodomain protein 4 isoform X2
STRINGXP_009605852.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-132BEL1-like homeodomain 2