PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009605852.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TALE

Protein Properties

Length: 747aa MW: 83135.6 Da PI: 7.0201

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009605852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.5e-09	530	567	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_009605852.1 530 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 567 664459******************************88 PP
2	BELL	118	4.4e-38	391	461	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r +q++k kLls+ +eVdkrY++y+eq+q+v++sF+ v+g g+a+pYt+lA+ka+SrhF+cLkdaia q+ XP_009605852.1 391 RIGHQRRKIKLLSMFDEVDKRYNHYCEQMQMVVNSFDLVMGFGAAAPYTALAQKAMSRHFKCLKDAIAAQL 461 6679****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-72	314	459	IPR006563	POX domain
Pfam	PF07526	9.4E-52	319	458	IPR006563	POX domain
PROSITE profile	PS50071	12.487	508	571	IPR001356	Homeobox domain
CDD	cd00086	9.54E-12	511	572	No hit	No description
SMART	SM00389	4.0E-9	511	575	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	513	577	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-28	514	577	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	528	567	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MRWSYTLTNL RPSIIQFSSQ KSPFLWIILM SQDYHHQGLF SFSSVFEKPQ NEQQQHIAHQ 60 IRQEKLRVEG FNPPPPLVAI EEEQSSGLQV YGTAGMLSEM FNFPPGTTTA TATELLQNQL 120 TQCYRHPNQR PQQQLPWTTN LGSEWFSNRQ GMVVGGSLQV LSESIDNLKE LNDRNNITAH 180 YQRQHNQISS INAAESAMNL FAMNPQPRSP SPSSSHPTTT TLQGFPNAGG GHFGQFICGG 240 ASNTGNNFTN EIGGVNVIEG QGLSLSLSSS LQHLEAAKVE DQLRMSGEEM LFFNQGTSEN 300 HHHHQVHVGF GSSLGLVNVL RNSKYAKAAQ ELLEEFCSVG RSQLFKKNKV SRNNNTTTSS 360 NPNSNNPSRS NNHNTNSSSS KDLPPLSAAD RIGHQRRKIK LLSMFDEVDK RYNHYCEQMQ 420 MVVNSFDLVM GFGAAAPYTA LAQKAMSRHF KCLKDAIAAQ LKHSCELLGE KDTTTSGLTK 480 GETPRLKLLE KSLRQQQTAF HQMGMMDAEA WRPQRGLPER SVTILRAWLF EHFLHPYPSD 540 ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQKE AKEEEDDEME KSQNSSNNIA 600 QTPTPNSSTN TITTGTGTET KTAATVAATI LTVASDKRSE INVLENDPSI VAMNRLCFSE 660 NQAQHHESSS MATHEMAHNN FPAIQDSDDM SRREAVSGVE YGTTNIMANS DNGTRVIRFG 720 TSVAGDVSLT LGLHHAGNLP ENSHFFG

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MRWSYTLTNL RPSIIQFSSQ KSPFLWIILM SQDYHHQGLF SFSSVFEKPQ NEQQQHIAHQ  60
IRQEKLRVEG FNPPPPLVAI EEEQSSGLQV YGTAGMLSEM FNFPPGTTTA TATELLQNQL  120
TQCYRHPNQR PQQQLPWTTN LGSEWFSNRQ GMVVGGSLQV LSESIDNLKE LNDRNNITAH  180
YQRQHNQISS INAAESAMNL FAMNPQPRSP SPSSSHPTTT TLQGFPNAGG GHFGQFICGG  240
ASNTGNNFTN EIGGVNVIEG QGLSLSLSSS LQHLEAAKVE DQLRMSGEEM LFFNQGTSEN  300
HHHHQVHVGF GSSLGLVNVL RNSKYAKAAQ ELLEEFCSVG RSQLFKKNKV SRNNNTTTSS  360
NPNSNNPSRS NNHNTNSSSS KDLPPLSAAD RIGHQRRKIK LLSMFDEVDK RYNHYCEQMQ  420
MVVNSFDLVM GFGAAAPYTA LAQKAMSRHF KCLKDAIAAQ LKHSCELLGE KDTTTSGLTK  480
GETPRLKLLE KSLRQQQTAF HQMGMMDAEA WRPQRGLPER SVTILRAWLF EHFLHPYPSD  540
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQKE AKEEEDDEME KSQNSSNNIA  600
QTPTPNSSTN TITTGTGTET KTAATVAATI LTVASDKRSE INVLENDPSI VAMNRLCFSE  660
NQAQHHESSS MATHEMAHNN FPAIQDSDDM SRREAVSGVE YGTTNIMANS DNGTRVIRFG  720
TSVAGDVSLT LGLHHAGNLP ENSHFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	517	574	5	62	Homeobox protein Meis2
3k2a_B	2e-15	517	574	5	62	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605852.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_018627676.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-147	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1S3XY34	0.0	A0A1S3XY34_TOBAC; BEL1-like homeodomain protein 4 isoform X1
STRING	XP_009605852.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-132	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]