PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009605673.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 357aa MW: 40245.1 Da PI: 5.1221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009605673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	172	219	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h Er+RR+r+ ++f L +l+P++ kKl+Ka+iL A++YIk+L+ XP_009605673.1 172 QDHVLSERKRRERLTQRFISLSTLIPNL-----KKLDKASILGDAIKYIKQLE 219 568899********************.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.132	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-12	173	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-18	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-17	174	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.98E-14	174	223	No hit	No description
SMART	SM00353	6.2E-16	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MDMSSATWWS EMEIMNMNDL QYVEHCQTMT ASVDELPFDN NYPFSPCTYG IQAAEILEEK 60 PAFWSSRMET DHQNTYFSSP SPSTSPPPSS SSPSVISFCN TNSPSIQNYH ENLNSSVKTE 120 VPSGTTTINF SSQTSPDFDF DDSQHLFQAT GFGAGDINQK KSTYSRTPLQ AQDHVLSERK 180 RRERLTQRFI SLSTLIPNLK KLDKASILGD AIKYIKQLEN QVKSLEEETK KFSEEPVVAV 240 KRTRLLSTYD NSSSSDENSN TSSTNKSVPD IEVRAADGNV LIRIYCKKQA TIIKEIFSQV 300 EKFNLTIISN SVMPFGDIST YITIVAKMDY QLNMTAEYVA KRIREAIMKL ISSHIDV

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MDMSSATWWS EMEIMNMNDL QYVEHCQTMT ASVDELPFDN NYPFSPCTYG IQAAEILEEK  60
PAFWSSRMET DHQNTYFSSP SPSTSPPPSS SSPSVISFCN TNSPSIQNYH ENLNSSVKTE  120
VPSGTTTINF SSQTSPDFDF DDSQHLFQAT GFGAGDINQK KSTYSRTPLQ AQDHVLSERK  180
RRERLTQRFI SLSTLIPNLK KLDKASILGD AIKYIKQLEN QVKSLEEETK KFSEEPVVAV  240
KRTRLLSTYD NSSSSDENSN TSSTNKSVPD IEVRAADGNV LIRIYCKKQA TIIKEIFSQV  300
EKFNLTIISN SVMPFGDIST YITIVAKMDY QLNMTAEYVA KRIREAIMKL ISSHIDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605673.1	0.0	PREDICTED: transcription factor bHLH18
Refseq	XP_009605674.1	0.0	PREDICTED: transcription factor bHLH18
TrEMBL	A0A1S4D2P9	0.0	A0A1S4D2P9_TOBAC; transcription factor bHLH18-like
STRING	XP_009605673.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4508	14	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-42	bHLH family protein