PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009605529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 527aa MW: 58216.7 Da PI: 6.9467 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.4e-30 | 245 | 302 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef+rsYY+Cts++C +kk+vers+ d+++++i+Y +H+h+k XP_009605529.1 245 EDGYNWRKYGQKLVRGNEFTRSYYKCTSPNCLAKKQVERSH-DGHITNIHYIAKHEHPK 302 7****************************************.***************85 PP | |||||||
2 | WRKY | 105.3 | 3.2e-33 | 422 | 480 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+ver+++dpk+v++ Yeg+H+he XP_009605529.1 422 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSAGCPAKKHVERASHDPKLVVTAYEGQHDHE 480 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-26 | 238 | 303 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.227 | 239 | 303 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-23 | 241 | 303 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-32 | 244 | 302 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-22 | 245 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-34 | 408 | 482 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-29 | 414 | 482 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.645 | 417 | 482 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-38 | 422 | 481 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-26 | 423 | 479 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MGTHNKDVTD EVSSEKLQQK QDLDAVTYRS ELKEKEICES MSAEVISGEL QKRVSPDALE 60 KSSQSNQDEN ALSTTCQEVS GEVKPKKSVV EGIEKFQQKP DPDTVTNRSE SKEKGTCDSV 120 SAEVVSDELL KGLSPDSLAK ASESSRVSVL PKKEPYIKSC ESDSPVKDRN VSLVPGKASE 180 SSQHIQREKM EVVVSQPNQE QVTCSIRPEK ALDKLQPRRN LDTSVQALPS DQEITPFRSP 240 EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TSPNCLAKKQ VERSHDGHIT NIHYIAKHEH 300 PKPLDSPQIS PEFVVPMQLK QTNMPMGTPR EAEGKKSIVI GQTCQSIEPS ESSLSAVIVP 360 AGGSATDTVL KPHKSGDEAD NSGGPDPKRQ KREVPRSDEI PPIKSHSEPQ HIVQTRSEVD 420 IVNDGYRWRK YGQKLVKGNP NPRSYYRCSS AGCPAKKHVE RASHDPKLVV TAYEGQHDHE 480 IPPSRTVMQN SAGADSNNTT RISGESTSES GENKHVGLDR VVHIGAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-34 | 246 | 483 | 4 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-173 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605529.1 | 0.0 | PREDICTED: WRKY transcription factor 1-like | ||||
Refseq | XP_018627585.1 | 0.0 | PREDICTED: WRKY transcription factor 1-like | ||||
Refseq | XP_018627586.1 | 0.0 | PREDICTED: WRKY transcription factor 1-like | ||||
TrEMBL | A0A1S4AQ48 | 0.0 | A0A1S4AQ48_TOBAC; probable WRKY transcription factor 2 isoform X1 | ||||
STRING | XP_009605529.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4558 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 6e-73 | zinc-dependent activator protein-1 |