PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605407.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 467aa    MW: 52764.6 Da    PI: 8.8333
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605407.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.2e-10352399448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
   XP_009605407.1 352 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 399
                      ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.975344403IPR017930Myb domain
SuperFamilySSF466891.58E-16346408IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-13346404IPR009057Homeodomain-like
SMARTSM007171.0E-11348401IPR001005SANT/Myb domain
CDDcd116607.59E-20352400No hitNo description
PfamPF002498.6E-8352399IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MNQNIAYRSG FASLGVWFDE SETRDVHASV SGVLCFDEKR VLKGMERKGV LYNIDSSIAA  60
KREEEINQEV LDLKRSHFEA GKIQAQNDLS APCEDYLLGL VVQESQSQNA MFGLTNSELH  120
DLSRDKCESQ ILVEYNAVKF PTAFTPGDIS NVDDVAGFFA EAAYSEKMNE SVIDHSALTS  180
KGFSFMSNAM QNEGQIVNCE IFDMHESSAI SPPVTSQTMN IDAPLTKKRL RKPTRRYIDE  240
SSDLNARRSR KREEVSTCAS ASKDKFPRVR CQKKSRAEST EMELFPEESS CKAIQVPFAS  300
LVNEECDKRH ASNAIQVMKA HKEATVVNPK DDATVPKKFD QDGVRRKHHR LWTVSEVRKL  360
IDGVAQYGVG RWSHIKKLYF SSSAHRTPVD LKDKWRNLLK ACYLQKQSKI TEKGKHNLSW  420
RPLPKSVLHR VNELANMHPY PRNGRCKSSV SPCSSSSPLH TNRSNIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605407.10.0PREDICTED: uncharacterized protein LOC104099973 isoform X3
RefseqXP_016452322.10.0PREDICTED: uncharacterized protein LOC107776885 isoform X3
TrEMBLA0A1S3YK410.0A0A1S3YK41_TOBAC; uncharacterized protein LOC107776885 isoform X3
STRINGXP_009605404.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-26TRF-like 6