PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605381.1
Common NameAn2
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 220aa    MW: 25443 Da    PI: 9.9243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++++++G g W+ ++ + g++R++k+c++rw++yl
   XP_009605381.1 14 KGAWTEEEDVLLKKCIEKYGEGKWHQVPLRAGLNRCRKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.86.7e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_009605381.1  67 RGDFSFDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23964IPR009057Homeodomain-like
PROSITE profilePS5129425.149965IPR017930Myb domain
SuperFamilySSF466893.26E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-151363IPR001005SANT/Myb domain
PfamPF002494.9E-161461IPR001005SANT/Myb domain
CDDcd001676.92E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.3E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129419.64366116IPR017930Myb domain
SMARTSM007174.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1367112IPR001005SANT/Myb domain
CDDcd001671.10E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNICTNKSSS GVKKGAWTEE EDVLLKKCIE KYGEGKWHQV PLRAGLNRCR KSCRLRWLNY  60
LRPHIKRGDF SFDEVDLILR LHKLLGNRWS LIAGRLPGRT ANDVKNYWNS HLRKKLIAPH  120
DQKESKQKAK KITIFRPRPR TFSKTNTCVK SNTNTVDKDI EGSSEIIRFN DNLKPTTEEL  180
TDDGIQWWAD LLANNYNNNG IEEADNSSPT LLHEEMPLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-23141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4726471e-143FJ472647.1 Nicotiana tabacum cultivar SamsunNN anthocyanin 2 (An2) mRNA, complete cds.
GenBankFJ4726481e-143FJ472648.1 Nicotiana tomentosiformis anthocyanin 2 (An2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306786.11e-163transcription factor MYB114-like
RefseqNP_001312447.11e-163transcription factor MYB114-like
SwissprotQ9FNV92e-68MY113_ARATH; Transcription factor MYB113
TrEMBLC1JAC91e-161C1JAC9_TOBAC; Anthocyanin 2
TrEMBLC1JAD01e-161C1JAD0_NICTO; Anthocyanin 2
STRINGXP_009605381.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-71myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]