PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604966.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 395aa    MW: 43722.1 Da    PI: 4.3037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18123172255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  XP_009604966.1 123 QYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDVEARRIRG 172
                     69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.66E-33123181No hitNo description
SMARTSM003801.6E-36123186IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22123182IPR016177DNA-binding domain
PROSITE profilePS5103224.171123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32123182IPR001471AP2/ERF domain
PfamPF008472.2E-11124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11124135IPR001471AP2/ERF domain
PRINTSPR003671.2E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MCGGAIISDC IPPPRSSRRL TADLLWGCSD LNQKKNPFNY QYSKPLRSEV ADLDYDDFEA  60
DFQVFKDCTD DDEDAYKVDG LKSFAAFSAS EQSGGTCDGS KSLKSVDSDK EVEKSSKRKR  120
KNQYRGIRQR PWGKWAAEIR DPQKGVRVWL GTFNTAEEAA RAYDVEARRI RGKKAKVNFP  180
DEAPVPASRQ AGKVNPRKVL PKESSNPVLY DTTFVNNVDD GCYGNLGFFE EKPTKNLYGY  240
EDLCPTPGDM EPNSYVPPSA AAGVYFNSDQ GSNSFELSDF GWGETCSRTP EISSFLSAAV  300
ESDEAQFVEG ACPEEKLISC SNISAPNDGN TAPKLSEELS TFESQMNFFQ AQQSEGNLDA  360
SVDAFLNAAD ATQDGENEMD LWFFDELSSL MRGVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21123180260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604966.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like
RefseqXP_016437186.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A1S3XB960.0A0A1S3XB96_TOBAC; ethylene-responsive transcription factor RAP2-2-like
STRINGXP_009604966.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-52related to AP2 12