PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009604706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20643.4 Da PI: 5.5141 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.2e-43 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++ p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +l XP_009604706.1 8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQQElPVDKRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQL 102 7*********************************************87538888***************************************** PP DUF260 95 allkee 100 al+++e XP_009604706.1 103 ALAQAE 108 **9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.813 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-43 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGAAGNSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFAIV HKVFGASNIS KMLQQELPVD 60 KRADAVSSLV YEANARMRDP VYGCVGAISY LQNQVSQLQM QLALAQAEIL CIQMPSSQDH 120 QPPNYLLPMS PPIHELVAAD DEKSFLNLSH YLNNFESSSS HTCNSDISQE GVFLWTGQYD 180 GSLEQW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 4 | 110 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 4 | 110 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604707.1 | 1e-135 | PREDICTED: LOB domain-containing protein 12-like | ||||
Refseq | XP_016435041.1 | 1e-135 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1S3X5C4 | 1e-134 | A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like | ||||
STRING | XP_009604706.1 | 1e-137 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-64 | LBD family protein |
Publications ? help Back to Top | |||
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