PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009604673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TALE | ||||||||
Protein Properties | Length: 640aa MW: 72116.2 Da PI: 6.7461 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.1e-09 | 393 | 430 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_009604673.1 393 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 430 554459******************************88 PP | |||||||
2 | BELL | 114.5 | 5.4e-37 | 256 | 324 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+k+kLl++leeVd+rYk+y++q+++v+s Feavag g+a++Y +lA+ka+SrhFrcL+d i++qi XP_009604673.1 256 ELQKRKTKLLQMLEEVDRRYKHYCDQMKAVVSTFEAVAGNGAARVYSTLASKAMSRHFRCLRDGIVGQI 324 89*****************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 6.3E-55 | 190 | 322 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-45 | 196 | 320 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.082 | 371 | 434 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 374 | 438 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.78E-11 | 374 | 435 | No hit | No description |
SuperFamily | SSF46689 | 5.13E-17 | 375 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 377 | 440 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 391 | 430 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MAGQESEEIK PRSMVTSTGY WYSDHTSTPS NIPNLVNHQL QSFETNPEIY NLTSGMEMIG 60 FPTNNPQVMW KGNFFNKTGG NSTGPSSSKS TNEQFYQHGN FTTSENMLLV SPTEDQAWHE 120 NNRLLVEDPS LRCVFPCEGN ERPSQGLSLS LCSSNPSSIG LQSFELRHQQ QIIQDGFLGK 180 AAANIQQQNQ GYYHQLKDSR YLGPAQELLV EFCSLGTKQN DHSSAKVLKQ QKSNQWEDEN 240 ASTSKKQTLQ SLDLLELQKR KTKLLQMLEE VDRRYKHYCD QMKAVVSTFE AVAGNGAARV 300 YSTLASKAMS RHFRCLRDGI VGQIKATKKA MGEKDTVVVP GTTRGETPRL RLLDQTLRQQ 360 KAFQQMNMME THPWRPQRGL PERSVSVLRA WLFEHFLHPY PSDVDKHILA RQTGLSRSQV 420 SNWFINARVR LWKPMVEEMY LEETKDQQEN LESPDGSKGL DHDMNGISVG RQINQNPQLH 480 IEDQKPNLVR IDSECISSII NHPEKNDTTN NNNKNCLQNH HQVHNLHSFG RGGDHSFGAI 540 ELDFSSYNHN STGAIAYGNE SVQHNIGGGV SLTLGLNQNG GSGMGLSTFS QASQSSLFYP 600 RDDHIDQDCQ QVQYSLLDSE NQNLPYRNLM GAQLLHDLAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 380 | 438 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 380 | 438 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-15 | 380 | 438 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-15 | 380 | 438 | 5 | 63 | Homeobox protein Meis2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF406700 | 0.0 | AF406700.1 Solanum tuberosum BEL1-related homeotic protein 14 (Bel14) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604673.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_009604675.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_009604676.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_018627370.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_018627371.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Refseq | XP_018627372.1 | 0.0 | PREDICTED: homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 1e-137 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1S3ZQT4 | 0.0 | A0A1S3ZQT4_TOBAC; homeobox protein BEL1 homolog | ||||
STRING | XP_009604673.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5300 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-124 | TALE family protein |
Publications ? help Back to Top | |||
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