PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604664.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1015aa MW: 112628 Da PI: 7.8219

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.1	4.5e-06	66	122	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R++ +k XP_009604664.1 66 KRPRDLLNPKAIKYMQSVFSIKDAINKKETREISALFGVTVTQVRDFFTAQRTRVRK 122 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.199	63	123	IPR001356	Homeobox domain
SMART	SM00389	0.0037	65	127	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-6	65	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-5	66	126	IPR009057	Homeodomain-like
CDD	cd00086	5.56E-4	66	122	No hit	No description
Gene3D	G3DSA:1.20.930.10	6.4E-4	223	313	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	9.94E-5	223	311	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence Send to blast
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKKETREISA LFGVTVTQVR DFFTAQRTRV 120 RKFLRLSREK ASISNAFIEG PCPIPLSSDP SSHTEPVPLD SVAPTCTDVG PSCSTQDEVL 180 TGIEETDKHF LDNILTLMRK EETFSGQVKL MDWILEVQNP SVLFWFLAKG GVMILATWLS 240 QAAVEEQTSV LHIILKVLCH LPLHKAFPVH MSAILQSVNR LRFYRTPDIS NRARILLAKW 300 SKMFAKSQAM KKRNGIKSAS DVQDELLLQQ SIGEVMGDEI WNSKAEDVGE SYANLCGPSE 360 NSRKLDSPHP VKLLTASSDD SNKRLNKGAL ASKTRERRKV QLMEQPSQRT TGRSLAVGRP 420 ATATQGRPLS ADDIQKAKMR AQFMQSKYGK AKNDESSLVK PEAPNGVTSP QDDILQGAPK 480 LQGCPKDDEH EKLDSVALKG SNQQESHRKL SFDVEEPPWK RCRRMQIPWC KPPEVTMSDA 540 WKVCAGGESK EVDIQNKRIR RERETIYRTV QEIPLNPKEP WDREMDPDDT LTTEIPIEQL 600 PDTEGAETVV LRPEDEETEA ASASTSNGIA TTAEPDVELL AVLLKNPELV YALTSGQAGN 660 LSSEETVKLL DMIKANGMNS LNSVTDLGRI AEKKVEVSLP SPTPSSDPGT SGSMQNFAKN 720 PFSQRSLMAV PEANGATRLA GLVRSQEKLQ ASSSIYPQST STTMLASQQL PIAPQLAQQL 780 SLLQAAAGSF EKDHRPSPLN PSLNQTALAN PMHSQLSTSE PAVNRNNYSP FGLTEYNLHS 840 ATAATTRIQG ETSGNIRSSP MPIANVQQRT VSLHMPQMAV SHTPPRPQLQ TQPQPGYTPE 900 HMWGTMSGSA LNRGYQENSI PNHYNAHLAG HVEPGLQHAA WRGNYVEEAG FESWSPDNSP 960 VRRQEQVGRW NHSEHRMNMR ENYRSDLSTS RNPSYHSGYR GPDDGGNRRW GDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence Send to blast

MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL  60
SIKIGKRPRD LLNPKAIKYM QSVFSIKDAI NKKETREISA LFGVTVTQVR DFFTAQRTRV  120
RKFLRLSREK ASISNAFIEG PCPIPLSSDP SSHTEPVPLD SVAPTCTDVG PSCSTQDEVL  180
TGIEETDKHF LDNILTLMRK EETFSGQVKL MDWILEVQNP SVLFWFLAKG GVMILATWLS  240
QAAVEEQTSV LHIILKVLCH LPLHKAFPVH MSAILQSVNR LRFYRTPDIS NRARILLAKW  300
SKMFAKSQAM KKRNGIKSAS DVQDELLLQQ SIGEVMGDEI WNSKAEDVGE SYANLCGPSE  360
NSRKLDSPHP VKLLTASSDD SNKRLNKGAL ASKTRERRKV QLMEQPSQRT TGRSLAVGRP  420
ATATQGRPLS ADDIQKAKMR AQFMQSKYGK AKNDESSLVK PEAPNGVTSP QDDILQGAPK  480
LQGCPKDDEH EKLDSVALKG SNQQESHRKL SFDVEEPPWK RCRRMQIPWC KPPEVTMSDA  540
WKVCAGGESK EVDIQNKRIR RERETIYRTV QEIPLNPKEP WDREMDPDDT LTTEIPIEQL  600
PDTEGAETVV LRPEDEETEA ASASTSNGIA TTAEPDVELL AVLLKNPELV YALTSGQAGN  660
LSSEETVKLL DMIKANGMNS LNSVTDLGRI AEKKVEVSLP SPTPSSDPGT SGSMQNFAKN  720
PFSQRSLMAV PEANGATRLA GLVRSQEKLQ ASSSIYPQST STTMLASQQL PIAPQLAQQL  780
SLLQAAAGSF EKDHRPSPLN PSLNQTALAN PMHSQLSTSE PAVNRNNYSP FGLTEYNLHS  840
ATAATTRIQG ETSGNIRSSP MPIANVQQRT VSLHMPQMAV SHTPPRPQLQ TQPQPGYTPE  900
HMWGTMSGSA LNRGYQENSI PNHYNAHLAG HVEPGLQHAA WRGNYVEEAG FESWSPDNSP  960
VRRQEQVGRW NHSEHRMNMR ENYRSDLSTS RNPSYHSGYR GPDDGGNRRW GDRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	1e-161	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604664.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-167	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1U7WQL2	0.0	A0A1U7WQL2_NICSY; homeobox protein LUMINIDEPENDENS
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-168	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]